Explore the Pseudomonas aeruginosa Metabolome Database (PAMDB) maintained by the Mass Spectrometry Center at the University of Maryland School of Pharmacy.

PAMDB Version 1.0

The PAMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Pseudomonas aeruginosa (reference strain PAO1). PAMDB currently contains more than 4370 small molecules and 5695 proteins, including 1267 richly annotated enzymes and transporters. It also has 938 metabolic pathways.

A total of 7790 reactions are also contained in the database. Each metabolite is linked to a variety of data describing the compound, including:

  • Ontology
  • Physical properties
  • Reactions
  • Pathways
  • References
  • External links
  • Associated proteins or enzymes

Explore the PAMDB here.

Citing PAMDB

PAMDB is offered to the public as a freely available resource for academic purposes. Please cite the PAMDB paper in any resulting publications.

  1. Weiliang Huang, Luke K. Brewer, Jace W. Jones, Angela T. Nguyen, Ana Marcu, David S. Wishart, Amanda G. Oglesby-Sherrouse, Maureen A. Kane, and Angela Wilks (2018). PAMDB: a comprehensive Pseudomonas aeruginosa metabolome database. Nucleic Acids Res. 46(D1):D575-D580. PMID: 29106626  DOI: 10.1093/nar/gkx1061

About this Project

This project is supported by the University of Maryland, School of Pharmacy Mass Spectrometry Center, a Waters Center of Excellence. The center is an NIH-investigator funded research and core facility that supports a wide range of cutting-edge metabolomic studies. The Center is supported through a center grant from the University of Maryland and NIH grants to its members. The PAMDB project is affiliated with The Metabolomics Innovation Centre (TMIC) a leading metabolomics research and service center funded through Genome Alberta, Genome British Columbia and Genome Canada.